Geometric and Graph Data Analysis

Relevant Papers

  • Visualizing Structure and Transitions for Biological Data Exploration (PHATE). With Kevin R. Moon, David van Dijk, Zheng Wang, Scott Gigante, Daniel Burkhardt, William Chen, Kristina Yim, Antonia van den Elzen, Ronald R. Coifman, Natalia B. Ivanova, Guy Wolf and Smita Krishnaswamy. 2019. bioRxiv.
  • Geometric Scattering on Manifolds. With Michael Perlmutter and Guy Wolf.
    • A short version of this paper appeared In the NeurIPS Workshop on Integration of Deep Learning Theories, Montreal, Canada, December 8, 2018 (contributed spotlight talk). pdf, NIPS DLTheory.
    • A longer version of this paper can be found here: pdfarXiv.
  • Geometric Scattering for Graph Data Analysis. With Feng Gao and Guy Wolf. 2019.
    • A short version of this paper will appear in the ICLR Workshop on Representation Learning on Graphs and Manifolds, New Orleans, United States, May 6, 2019. pdf, ICLR RLGM.
    • A longer version of this paper (with no appendices though) will appear in the SDM19 Workshop on Deep Learning for Graphs, Calgary, Canada, May 4, 2019. pdf, SDM19 DLG.
    • The full version of this paper can be found here: arXiv.
  • Time Coupled Diffusion Maps. With Nicholas Marshall. Applied and Computational Harmonic Analysis, volume 45, issue 3, pages 709-728, 2018. pdf, arXiv, ScienceDirect.
  • A Diffusion-based Condensation Process for Multiscale Analysis of Single Cell Data. With Tobias Welp, Guy Wolf and Smita Krishnaswamy. In ICML Workshop Computational Biology, New York, June 24, 2016. 5 pages. pdfICML WCB.
  • Diffusion maps for changing data. With Ronald R. Coifman. Applied and Computational Harmonic Analysis, volume 36, issue 1, pages 79-107, January 2014. pdfarXivScienceDirectSoftware.
  • Bi-stochastic kernels via asymmetric affinity functions. With Ronald R. Coifman. Applied and Computational Harmonic Analysis, volume 35, issue 1, pages 177-180, July 2013. pdfarXivScienceDirect.
  • Frame based kernel methods for automatic classification in hyperspectral data. With John J. Benedetto, Wojciech Czaja and Justin C. Flake. In Proceedings of the IEEE 2009 International Geoscience and Remote Sensing Symposium, volume 4, pages 697-700, Cape Town, South Africa, July 12-17, 2009. pdfIEEE Xplore.